A curated catalogue of human genomic structural variation

Could not open database: -------------------- EXCEPTION -------------------- MSG: FATAL: database "hg19_dgvgold" does not exist STACK Bio::DB::SeqFeature::Store::DBI::Pg::init /usr/local/share/perl5/Bio/DB/SeqFeature/Store/DBI/Pg.pm:213 STACK Bio::DB::SeqFeature::Store::new /usr/local/share/perl5/Bio/DB/SeqFeature/Store.pm:388 STACK (eval) /usr/local/lib64/perl5/Bio/Graphics/Browser2/DataBase.pm:45 STACK Bio::Graphics::Browser2::DataBase::open_database /usr/local/lib64/perl5/Bio/Graphics/Browser2/DataBase.pm:45 STACK Bio::Graphics::Browser2::DataSource::open_database /usr/local/lib64/perl5/Bio/Graphics/Browser2/DataSource.pm:967 STACK Bio::Graphics::Browser2::RegionSearch::_search_features_locally /usr/local/lib64/perl5/Bio/Graphics/Browser2/RegionSearch.pm:401 STACK (eval) (eval 213):3 STACK Bio::Graphics::Browser2::RegionSearch::search_features_locally /usr/local/lib64/perl5/Bio/Graphics/Browser2/RegionSearch.pm:350 STACK Bio::Graphics::Browser2::RegionSearch::search_features /usr/local/lib64/perl5/Bio/Graphics/Browser2/RegionSearch.pm:301 STACK Bio::Graphics::Browser2::Render::region /usr/local/lib64/perl5/Bio/Graphics/Browser2/Render.pm:1116 STACK Bio::Graphics::Browser2::Render::segment /usr/local/lib64/perl5/Bio/Graphics/Browser2/Render.pm:1170 STACK Bio::Graphics::Browser2::Render::_update_state /usr/local/lib64/perl5/Bio/Graphics/Browser2/Render.pm:1877 STACK Bio::Graphics::Browser2::Render::update_state /usr/local/lib64/perl5/Bio/Graphics/Browser2/Render.pm:1867 STACK Bio::Graphics::Browser2::Render::run /usr/local/lib64/perl5/Bio/Graphics/Browser2/Render.pm:281 STACK toplevel /var/www/cgi-bin/gb2/gbrowse:56 -------------------------------------------

Browser Select Tracks Custom Tracks Preferences
- Search
Landmark or Region:
Examples: chr7:71890181..72690180, CFTR, AC108171.3, nsv529033.
  
Data Source


 Filter variants
<< Back to Browser Show Favorites Only Clear All Favorites
- Tracks
- Breakpoints
   
Breakpoint annotations from Lam et al (Blue:Gain;Red:Loss;Indigo:Inversion;Brown:Complex) [?] Annotations from Conrad et al [?] Breakpoint annotations from Pang 2012 (Blue:Gain;Red:Loss;Indigo:Inversion;Brown:Complex) [?]
- CGH Arrays
   
Agilent 244k [?] Clones on SMRT BAC Array [?] 
- CN Assays
   
Life Technologies TaqMan Copy Number Assays [?]  
- Chromosome
   
Cytogenetic Bands [?] Assembly [?] Gap [?]
- Clones
   
BAC End Pairs [?] Fosmid End Pairs [?] 
- Disease
   
ISCA Curated clinically relevant regions [?] Disease Genes (OMIM) [?] DECIPHER: Chromosomal Imbalance and Phenotype in Humans (Blue:Gain;Red:Loss;Brown:Complex;Black:NA) [?]
ISCA Clinical cytogenetic testing (Blue:Gain;Red:Loss;Brown:Complex;Black:NA) [?] DECIPHER Genomic Disorders [?] 
- Gene
   
RefSeq Genes [?] mRNA [?] microRNA [?]
- General
   
Personal Genome Variants (Blue:Gain;Red:Loss;Brown:Complex;Purple:Inversion;Black:Unknown) [?] SNPs [?] 
dbRIP [?] RepeatMasker [?] 
- SNP Arrays
   
AFFY SNP Array 5.0 [?] ILMN HumanHap 300 [?] ILMN HumanHap 650Y [?]
AFFY SNP Array 6.0 [?] ILMN HumanHap 550 [?] ILMN Human 660W [?]
AFFY CytoScan HD [?] ILMN Human 610 Quad [?] ILMN HumanHap 1M [?]
- Segmental Duplications
   
UCSC segmental duplications [?]  
- Study Variants
   
DGV Structural Variants (Blue:Gain;Red:Loss;Brown:Complex;Purple:Inversion;Black:Unknown) [?] Unannotated Studies (Blue:Gain;Red:Loss;Brown:Complex;Purple:Inversion;Black:Unknown) [?] DGV Gold Standard Variants (blue=Gain; red=Loss; brown=Gain+Loss) [?]
Supporting Variants (Blue:Gain;Red:Loss;Brown:Complex;Purple:Inverison;Black:Unknown) [?] Nat. Rev. Gen. CNV Map - Inclusive (blue=Gain; red=Loss; brown=Gain+Loss) [?] OPGP Affymetrix CytoHD Variants (blue=Gain; red=Loss; solidbox=AFFY_FILTER; solidline=MULTI_ALGO; dashedline=ONLY_CHAS) [?]
DGV Version 1 Structural Variants (Blue:Gain;Red:Loss;Brown:Complex;Purple:Inversion;Black:Unknown) [?] Nat. Rev. Gen. CNV Map - Stringent (blue=Gain; red=Loss; brown=Gain+Loss) [?] 
- Overview
   
Chromosome (overview)   

Custom Tracks

[Help with uploading custom tracks]

There are no tracks yet.

Add custom tracks : [From text] [From a URL] [From a file]

Image Width
Highlight feature(s) (feature1 feature2...)
Clear highlighting
  Highlight regions (region1:start..end region2:start..end)
Clear highlighting
  Region Size (bp)

For questions about the data at this site, please contact us